hgu133plus2 microarray Search Results


hgu133plus2  (Thermo Fisher)
90
Thermo Fisher hgu133plus2
Distribution of GNUSE values . Histograms of GNUSE values from (A) 11299 HGU133a arrays from 338 studies and (B) 11029 <t>HGU133plus2</t> arrays from 471 studies. Most GNUSE values are of acceptable quality (close to one), but the long right tail suggests some very poor quality probesets.
Hgu133plus2, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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hgu133plus2 0 microarrays  (Thermo Fisher)
86
Thermo Fisher hgu133plus2 0 microarrays
Distribution of GNUSE values . Histograms of GNUSE values from (A) 11299 HGU133a arrays from 338 studies and (B) 11029 <t>HGU133plus2</t> arrays from 471 studies. Most GNUSE values are of acceptable quality (close to one), but the long right tail suggests some very poor quality probesets.
Hgu133plus2 0 Microarrays, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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hgu133plus2 microarrays  (Thermo Fisher)
90
Thermo Fisher hgu133plus2 microarrays
Distribution of GNUSE values . Histograms of GNUSE values from (A) 11299 HGU133a arrays from 338 studies and (B) 11029 <t>HGU133plus2</t> arrays from 471 studies. Most GNUSE values are of acceptable quality (close to one), but the long right tail suggests some very poor quality probesets.
Hgu133plus2 Microarrays, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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mrna microarrays  (Thermo Fisher)
86
Thermo Fisher mrna microarrays
Distribution of GNUSE values . Histograms of GNUSE values from (A) 11299 HGU133a arrays from 338 studies and (B) 11029 <t>HGU133plus2</t> arrays from 471 studies. Most GNUSE values are of acceptable quality (close to one), but the long right tail suggests some very poor quality probesets.
Mrna Microarrays, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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hgu133plus 2.0 microarray  (Thermo Fisher)
90
Thermo Fisher hgu133plus 2.0 microarray
In silico validation of HTA 2.0 data on independent datasets. A ) Linear correlation with an independent HTA 2.0 GEO dataset (GSE73360) [LINC02023, AC092834.1, SNHG14, AL365361.1, AC140658.1, AC142086.4, AC019330.1, THRB-IT1, LINC02535, B3GALT5-AS1, LINC02441, MIR3936HG, AC124312.3, AL928768.1, AL359397.2, LINC01752, AL355922.2, AC087379.1, AC011891.1, AC044802.2, LINC01133, MEG8, CDKN2B-AS1, AC025423.4, LINC01268, CCAT1, UCA1, AC123023.1, CASC19, AL645939.4, AC126365.1, LINC00152, AC016831.1, AC021218.1, LINC02474, PCAT1, LINC02163], B ) Linear correlation with an independent HGU133 Plus 2.0 dataset <t>(GSE37364)</t> [UCA1, LINC00152, AC016831.1 LINC02023, THRB-IT1, LINC02535, SNHG14, AC124312.3, AL928768.1, CDKN2B-AS1] C ) Linear correlation with TCGA COAD dataset [LINC01133, AL365361.1, LINC00152, LINC02023, LINC02163, LINC01268, CASC19, CDKN2B-AS1, AC087379.1, LINC02441, SNHG14, AC124312.3, UCA1, LINC01752, CCAT1, AL928768.1]. Our own HTA 2.0 data (GSE100179) are represented on X-axis
Hgu133plus 2.0 Microarray, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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microarray hgu133plus2.0  (Thermo Fisher)
90
Thermo Fisher microarray hgu133plus2.0
In silico validation of HTA 2.0 data on independent datasets. A ) Linear correlation with an independent HTA 2.0 GEO dataset (GSE73360) [LINC02023, AC092834.1, SNHG14, AL365361.1, AC140658.1, AC142086.4, AC019330.1, THRB-IT1, LINC02535, B3GALT5-AS1, LINC02441, MIR3936HG, AC124312.3, AL928768.1, AL359397.2, LINC01752, AL355922.2, AC087379.1, AC011891.1, AC044802.2, LINC01133, MEG8, CDKN2B-AS1, AC025423.4, LINC01268, CCAT1, UCA1, AC123023.1, CASC19, AL645939.4, AC126365.1, LINC00152, AC016831.1, AC021218.1, LINC02474, PCAT1, LINC02163], B ) Linear correlation with an independent HGU133 Plus 2.0 dataset <t>(GSE37364)</t> [UCA1, LINC00152, AC016831.1 LINC02023, THRB-IT1, LINC02535, SNHG14, AC124312.3, AL928768.1, CDKN2B-AS1] C ) Linear correlation with TCGA COAD dataset [LINC01133, AL365361.1, LINC00152, LINC02023, LINC02163, LINC01268, CASC19, CDKN2B-AS1, AC087379.1, LINC02441, SNHG14, AC124312.3, UCA1, LINC01752, CCAT1, AL928768.1]. Our own HTA 2.0 data (GSE100179) are represented on X-axis
Microarray Hgu133plus2.0, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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hgu133plus2 microarrays identified 1847 genes  (Thermo Fisher)
86
Thermo Fisher hgu133plus2 microarrays identified 1847 genes
In silico validation of HTA 2.0 data on independent datasets. A ) Linear correlation with an independent HTA 2.0 GEO dataset (GSE73360) [LINC02023, AC092834.1, SNHG14, AL365361.1, AC140658.1, AC142086.4, AC019330.1, THRB-IT1, LINC02535, B3GALT5-AS1, LINC02441, MIR3936HG, AC124312.3, AL928768.1, AL359397.2, LINC01752, AL355922.2, AC087379.1, AC011891.1, AC044802.2, LINC01133, MEG8, CDKN2B-AS1, AC025423.4, LINC01268, CCAT1, UCA1, AC123023.1, CASC19, AL645939.4, AC126365.1, LINC00152, AC016831.1, AC021218.1, LINC02474, PCAT1, LINC02163], B ) Linear correlation with an independent HGU133 Plus 2.0 dataset <t>(GSE37364)</t> [UCA1, LINC00152, AC016831.1 LINC02023, THRB-IT1, LINC02535, SNHG14, AC124312.3, AL928768.1, CDKN2B-AS1] C ) Linear correlation with TCGA COAD dataset [LINC01133, AL365361.1, LINC00152, LINC02023, LINC02163, LINC01268, CASC19, CDKN2B-AS1, AC087379.1, LINC02441, SNHG14, AC124312.3, UCA1, LINC01752, CCAT1, AL928768.1]. Our own HTA 2.0 data (GSE100179) are represented on X-axis
Hgu133plus2 Microarrays Identified 1847 Genes, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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microarray data (hgu133plus2 hgu133a  (Thermo Fisher)
90
Thermo Fisher microarray data (hgu133plus2 hgu133a
In silico validation of HTA 2.0 data on independent datasets. A ) Linear correlation with an independent HTA 2.0 GEO dataset (GSE73360) [LINC02023, AC092834.1, SNHG14, AL365361.1, AC140658.1, AC142086.4, AC019330.1, THRB-IT1, LINC02535, B3GALT5-AS1, LINC02441, MIR3936HG, AC124312.3, AL928768.1, AL359397.2, LINC01752, AL355922.2, AC087379.1, AC011891.1, AC044802.2, LINC01133, MEG8, CDKN2B-AS1, AC025423.4, LINC01268, CCAT1, UCA1, AC123023.1, CASC19, AL645939.4, AC126365.1, LINC00152, AC016831.1, AC021218.1, LINC02474, PCAT1, LINC02163], B ) Linear correlation with an independent HGU133 Plus 2.0 dataset <t>(GSE37364)</t> [UCA1, LINC00152, AC016831.1 LINC02023, THRB-IT1, LINC02535, SNHG14, AC124312.3, AL928768.1, CDKN2B-AS1] C ) Linear correlation with TCGA COAD dataset [LINC01133, AL365361.1, LINC00152, LINC02023, LINC02163, LINC01268, CASC19, CDKN2B-AS1, AC087379.1, LINC02441, SNHG14, AC124312.3, UCA1, LINC01752, CCAT1, AL928768.1]. Our own HTA 2.0 data (GSE100179) are represented on X-axis
Microarray Data (Hgu133plus2 Hgu133a, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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microarray data (hgu133plus2 hgu133a - by Bioz Stars, 2026-04
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hgu133plus2.0 microarrays  (Thermo Fisher)
90
Thermo Fisher hgu133plus2.0 microarrays
In silico validation of HTA 2.0 data on independent datasets. A ) Linear correlation with an independent HTA 2.0 GEO dataset (GSE73360) [LINC02023, AC092834.1, SNHG14, AL365361.1, AC140658.1, AC142086.4, AC019330.1, THRB-IT1, LINC02535, B3GALT5-AS1, LINC02441, MIR3936HG, AC124312.3, AL928768.1, AL359397.2, LINC01752, AL355922.2, AC087379.1, AC011891.1, AC044802.2, LINC01133, MEG8, CDKN2B-AS1, AC025423.4, LINC01268, CCAT1, UCA1, AC123023.1, CASC19, AL645939.4, AC126365.1, LINC00152, AC016831.1, AC021218.1, LINC02474, PCAT1, LINC02163], B ) Linear correlation with an independent HGU133 Plus 2.0 dataset <t>(GSE37364)</t> [UCA1, LINC00152, AC016831.1 LINC02023, THRB-IT1, LINC02535, SNHG14, AC124312.3, AL928768.1, CDKN2B-AS1] C ) Linear correlation with TCGA COAD dataset [LINC01133, AL365361.1, LINC00152, LINC02023, LINC02163, LINC01268, CASC19, CDKN2B-AS1, AC087379.1, LINC02441, SNHG14, AC124312.3, UCA1, LINC01752, CCAT1, AL928768.1]. Our own HTA 2.0 data (GSE100179) are represented on X-axis
Hgu133plus2.0 Microarrays, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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hgu133plus2.0 microarrays - by Bioz Stars, 2026-04
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human genome u133 plus 2 0 oligonucleotide arrays  (Thermo Fisher)
86
Thermo Fisher human genome u133 plus 2 0 oligonucleotide arrays
In silico validation of HTA 2.0 data on independent datasets. A ) Linear correlation with an independent HTA 2.0 GEO dataset (GSE73360) [LINC02023, AC092834.1, SNHG14, AL365361.1, AC140658.1, AC142086.4, AC019330.1, THRB-IT1, LINC02535, B3GALT5-AS1, LINC02441, MIR3936HG, AC124312.3, AL928768.1, AL359397.2, LINC01752, AL355922.2, AC087379.1, AC011891.1, AC044802.2, LINC01133, MEG8, CDKN2B-AS1, AC025423.4, LINC01268, CCAT1, UCA1, AC123023.1, CASC19, AL645939.4, AC126365.1, LINC00152, AC016831.1, AC021218.1, LINC02474, PCAT1, LINC02163], B ) Linear correlation with an independent HGU133 Plus 2.0 dataset <t>(GSE37364)</t> [UCA1, LINC00152, AC016831.1 LINC02023, THRB-IT1, LINC02535, SNHG14, AC124312.3, AL928768.1, CDKN2B-AS1] C ) Linear correlation with TCGA COAD dataset [LINC01133, AL365361.1, LINC00152, LINC02023, LINC02163, LINC01268, CASC19, CDKN2B-AS1, AC087379.1, LINC02441, SNHG14, AC124312.3, UCA1, LINC01752, CCAT1, AL928768.1]. Our own HTA 2.0 data (GSE100179) are represented on X-axis
Human Genome U133 Plus 2 0 Oligonucleotide Arrays, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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human genome u133 plus 2 0 oligonucleotide arrays - by Bioz Stars, 2026-04
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hgu-133plus2  (Thermo Fisher)
90
Thermo Fisher hgu-133plus2
In silico validation of HTA 2.0 data on independent datasets. A ) Linear correlation with an independent HTA 2.0 GEO dataset (GSE73360) [LINC02023, AC092834.1, SNHG14, AL365361.1, AC140658.1, AC142086.4, AC019330.1, THRB-IT1, LINC02535, B3GALT5-AS1, LINC02441, MIR3936HG, AC124312.3, AL928768.1, AL359397.2, LINC01752, AL355922.2, AC087379.1, AC011891.1, AC044802.2, LINC01133, MEG8, CDKN2B-AS1, AC025423.4, LINC01268, CCAT1, UCA1, AC123023.1, CASC19, AL645939.4, AC126365.1, LINC00152, AC016831.1, AC021218.1, LINC02474, PCAT1, LINC02163], B ) Linear correlation with an independent HGU133 Plus 2.0 dataset <t>(GSE37364)</t> [UCA1, LINC00152, AC016831.1 LINC02023, THRB-IT1, LINC02535, SNHG14, AC124312.3, AL928768.1, CDKN2B-AS1] C ) Linear correlation with TCGA COAD dataset [LINC01133, AL365361.1, LINC00152, LINC02023, LINC02163, LINC01268, CASC19, CDKN2B-AS1, AC087379.1, LINC02441, SNHG14, AC124312.3, UCA1, LINC01752, CCAT1, AL928768.1]. Our own HTA 2.0 data (GSE100179) are represented on X-axis
Hgu 133plus2, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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hgu-133plus2 - by Bioz Stars, 2026-04
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whole blood n 68 il lumina 317k affymetrix human genome u133 plus 2 0 gene expression microarrays  (Thermo Fisher)
86
Thermo Fisher whole blood n 68 il lumina 317k affymetrix human genome u133 plus 2 0 gene expression microarrays
In silico validation of HTA 2.0 data on independent datasets. A ) Linear correlation with an independent HTA 2.0 GEO dataset (GSE73360) [LINC02023, AC092834.1, SNHG14, AL365361.1, AC140658.1, AC142086.4, AC019330.1, THRB-IT1, LINC02535, B3GALT5-AS1, LINC02441, MIR3936HG, AC124312.3, AL928768.1, AL359397.2, LINC01752, AL355922.2, AC087379.1, AC011891.1, AC044802.2, LINC01133, MEG8, CDKN2B-AS1, AC025423.4, LINC01268, CCAT1, UCA1, AC123023.1, CASC19, AL645939.4, AC126365.1, LINC00152, AC016831.1, AC021218.1, LINC02474, PCAT1, LINC02163], B ) Linear correlation with an independent HGU133 Plus 2.0 dataset <t>(GSE37364)</t> [UCA1, LINC00152, AC016831.1 LINC02023, THRB-IT1, LINC02535, SNHG14, AC124312.3, AL928768.1, CDKN2B-AS1] C ) Linear correlation with TCGA COAD dataset [LINC01133, AL365361.1, LINC00152, LINC02023, LINC02163, LINC01268, CASC19, CDKN2B-AS1, AC087379.1, LINC02441, SNHG14, AC124312.3, UCA1, LINC01752, CCAT1, AL928768.1]. Our own HTA 2.0 data (GSE100179) are represented on X-axis
Whole Blood N 68 Il Lumina 317k Affymetrix Human Genome U133 Plus 2 0 Gene Expression Microarrays, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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whole blood n 68 il lumina 317k affymetrix human genome u133 plus 2 0 gene expression microarrays - by Bioz Stars, 2026-04
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Image Search Results


Distribution of GNUSE values . Histograms of GNUSE values from (A) 11299 HGU133a arrays from 338 studies and (B) 11029 HGU133plus2 arrays from 471 studies. Most GNUSE values are of acceptable quality (close to one), but the long right tail suggests some very poor quality probesets.

Journal: BMC Bioinformatics

Article Title: Assessing affymetrix GeneChip microarray quality

doi: 10.1186/1471-2105-12-137

Figure Lengend Snippet: Distribution of GNUSE values . Histograms of GNUSE values from (A) 11299 HGU133a arrays from 338 studies and (B) 11029 HGU133plus2 arrays from 471 studies. Most GNUSE values are of acceptable quality (close to one), but the long right tail suggests some very poor quality probesets.

Article Snippet: To assess the overall quality of publicly available microarray data, we computed GNUSE values for all Affymetrix HGU133a and HGU133plus2 MIAME-compliant arrays available from the Gene Expression Omnibus (GEO) [ ] in December, 2009.

Techniques:

Distribution of median GNUSE values . Histograms of median GNUSE values from (A) 11299 HGU133a arrays or (B) 11029 HGU133plus2 arrays. The red vertical line represents the threshold of 1.25 - arrays with a median GNUSE greater than this threshold are considered poor quality. In both cases, this threshold appears to separate the majority of good quality arrays from the long right tail of poor quality arrays.

Journal: BMC Bioinformatics

Article Title: Assessing affymetrix GeneChip microarray quality

doi: 10.1186/1471-2105-12-137

Figure Lengend Snippet: Distribution of median GNUSE values . Histograms of median GNUSE values from (A) 11299 HGU133a arrays or (B) 11029 HGU133plus2 arrays. The red vertical line represents the threshold of 1.25 - arrays with a median GNUSE greater than this threshold are considered poor quality. In both cases, this threshold appears to separate the majority of good quality arrays from the long right tail of poor quality arrays.

Article Snippet: To assess the overall quality of publicly available microarray data, we computed GNUSE values for all Affymetrix HGU133a and HGU133plus2 MIAME-compliant arrays available from the Gene Expression Omnibus (GEO) [ ] in December, 2009.

Techniques:

In silico validation of HTA 2.0 data on independent datasets. A ) Linear correlation with an independent HTA 2.0 GEO dataset (GSE73360) [LINC02023, AC092834.1, SNHG14, AL365361.1, AC140658.1, AC142086.4, AC019330.1, THRB-IT1, LINC02535, B3GALT5-AS1, LINC02441, MIR3936HG, AC124312.3, AL928768.1, AL359397.2, LINC01752, AL355922.2, AC087379.1, AC011891.1, AC044802.2, LINC01133, MEG8, CDKN2B-AS1, AC025423.4, LINC01268, CCAT1, UCA1, AC123023.1, CASC19, AL645939.4, AC126365.1, LINC00152, AC016831.1, AC021218.1, LINC02474, PCAT1, LINC02163], B ) Linear correlation with an independent HGU133 Plus 2.0 dataset (GSE37364) [UCA1, LINC00152, AC016831.1 LINC02023, THRB-IT1, LINC02535, SNHG14, AC124312.3, AL928768.1, CDKN2B-AS1] C ) Linear correlation with TCGA COAD dataset [LINC01133, AL365361.1, LINC00152, LINC02023, LINC02163, LINC01268, CASC19, CDKN2B-AS1, AC087379.1, LINC02441, SNHG14, AC124312.3, UCA1, LINC01752, CCAT1, AL928768.1]. Our own HTA 2.0 data (GSE100179) are represented on X-axis

Journal: BMC Cancer

Article Title: Genome-wide expression profiling in colorectal cancer focusing on lncRNAs in the adenoma-carcinoma transition

doi: 10.1186/s12885-019-6180-5

Figure Lengend Snippet: In silico validation of HTA 2.0 data on independent datasets. A ) Linear correlation with an independent HTA 2.0 GEO dataset (GSE73360) [LINC02023, AC092834.1, SNHG14, AL365361.1, AC140658.1, AC142086.4, AC019330.1, THRB-IT1, LINC02535, B3GALT5-AS1, LINC02441, MIR3936HG, AC124312.3, AL928768.1, AL359397.2, LINC01752, AL355922.2, AC087379.1, AC011891.1, AC044802.2, LINC01133, MEG8, CDKN2B-AS1, AC025423.4, LINC01268, CCAT1, UCA1, AC123023.1, CASC19, AL645939.4, AC126365.1, LINC00152, AC016831.1, AC021218.1, LINC02474, PCAT1, LINC02163], B ) Linear correlation with an independent HGU133 Plus 2.0 dataset (GSE37364) [UCA1, LINC00152, AC016831.1 LINC02023, THRB-IT1, LINC02535, SNHG14, AC124312.3, AL928768.1, CDKN2B-AS1] C ) Linear correlation with TCGA COAD dataset [LINC01133, AL365361.1, LINC00152, LINC02023, LINC02163, LINC01268, CASC19, CDKN2B-AS1, AC087379.1, LINC02441, SNHG14, AC124312.3, UCA1, LINC01752, CCAT1, AL928768.1]. Our own HTA 2.0 data (GSE100179) are represented on X-axis

Article Snippet: For in silico validation, expression levels of lncRNAs were also analyzed on GSE37364 HGU133Plus 2.0 microarray (Affymetrix) dataset of 65 human colonic biopsy samples (27 CRCs and 38 normal donors without evidence of disease) [ ].

Techniques: In Silico